Package org.lemsml.jlems.core.run

Class KScheme

java.lang.Object

org.lemsml.jlems.core.run.KScheme

public class KScheme
extends java.lang.Object

Field Summary

Fields

Modifier and Type	Field	Description
(package private) java.lang.String	edgesName
(package private) java.lang.String	forwardVar
(package private) java.lang.String	name
(package private) java.lang.String	nodesName
(package private) int	nrate
(package private) int	nstate
(package private) int[][]	rateTable
(package private) java.lang.String	reverseVar
(package private) java.lang.String	stateVarname

Constructor Summary

Constructors

Constructor	Description
KScheme(java.lang.String snm, int[][] tbl, java.lang.String sn, java.lang.String se, java.lang.String sov, java.lang.String fv, java.lang.String rv)

Method Summary

Modifier and Type	Method	Description
void	advance(StateInstance psi, KSchemeInst inst, double dt)
void	evaluate(StateInstance psi, KSchemeInst inst)
java.lang.String	getEdgesName()
java.lang.String	getName()
java.lang.String	getNodesName()
KScheme	makeCopy()
KSchemeInst	makeInstance(MultiInstance smi, MultiInstance rmi)

Methods inherited from class java.lang.Object

clone, equals, finalize, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait

Field Detail

name

java.lang.String name

nstate

int nstate

nrate

int nrate

rateTable

int[][] rateTable

forwardVar

java.lang.String forwardVar

reverseVar

java.lang.String reverseVar

nodesName

java.lang.String nodesName

edgesName

java.lang.String edgesName

stateVarname

java.lang.String stateVarname

Constructor Detail

KScheme

public KScheme(java.lang.String snm,
               int[][] tbl,
               java.lang.String sn,
               java.lang.String se,
               java.lang.String sov,
               java.lang.String fv,
               java.lang.String rv)

Method Detail

makeCopy

public KScheme makeCopy()

getNodesName

public java.lang.String getNodesName()

getEdgesName

public java.lang.String getEdgesName()

makeInstance

public KSchemeInst makeInstance(MultiInstance smi,
                                MultiInstance rmi)

getName

public java.lang.String getName()

evaluate

public void evaluate(StateInstance psi,
                     KSchemeInst inst)
              throws RuntimeError

Throws:

RuntimeError

advance

public void advance(StateInstance psi,
                    KSchemeInst inst,
                    double dt)
             throws RuntimeError

Throws:

RuntimeError