eventbasedparsing

Class Pdb2XML

java.lang.Object

eventbasedparsing.Pdb2XML

public class Pdb2XML
extends Object

Pdb2XML is an application for the conversion native output from BLAST-like bioinformatics software into an XML format. For currently supported bioinformatics programs, please see the documentation for the BlastLikeSaxParser.

The XML produced should validate against the biojava MacromolecularStructureCollection DTD. Usage is:

 java Pdb2XML <pdb file pathname>
 

-mode is optional paramater.

Copyright © 2000 Cambridge Antibody Technology.

Primary author -

• Simon Brocklehurst (CAT)

Other authors -

• Tim Dilks (CAT)
• Colin Hardman (CAT)
• Stuart Johnston (CAT)

Version:

1.1

Author:

Cambridge Antibody Technology Group plc (CAT)

Constructor Summary

Constructors

Constructor and Description
Pdb2XML()

Method Summary

Methods

Modifier and Type	Method and Description
static void	main(String[] args) Converts an file containing the output from bioinformatics software with a "pdb like" format into an XML format.

Methods inherited from class java.lang.Object

clone, equals, finalize, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait

Constructor Detail

Pdb2XML

public Pdb2XML()

Method Detail

main

public static void main(String[] args)
                 throws Exception

Converts an file containing the output from bioinformatics software with a "pdb like" format into an XML format.

Parameters:

args - a String[] representation of a pathname

Throws:

Exception - if an error occurs