game

Class SeqIOTatler

java.lang.Object

org.biojava.bio.seq.io.SeqIOAdapter

game.SeqIOTatler

All Implemented Interfaces:

org.biojava.bio.seq.io.SeqIOListener

public class SeqIOTatler
extends org.biojava.bio.seq.io.SeqIOAdapter

dumps events being passed to the class

Constructor Summary

Constructors

Constructor and Description
SeqIOTatler()

Method Summary

Methods

Modifier and Type	Method and Description
void	addFeatureProperty(Object key, Object value)
void	addSequenceProperty(Object key, Object value)
void	addSymbols(org.biojava.bio.symbol.Alphabet alpha, org.biojava.bio.symbol.Symbol[] syms, int start, int length)
void	endFeature()
void	endSequence()
void	setName(String name)
void	startFeature(org.biojava.bio.seq.Feature.Template feature)
void	startSequence()

Methods inherited from class org.biojava.bio.seq.io.SeqIOAdapter

setURI

Methods inherited from class java.lang.Object

clone, equals, finalize, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait

Constructor Detail

SeqIOTatler

public SeqIOTatler()

Method Detail

addFeatureProperty

public void addFeatureProperty(Object key,
                      Object value)

Specified by:

addFeatureProperty in interface org.biojava.bio.seq.io.SeqIOListener

Overrides:

addFeatureProperty in class org.biojava.bio.seq.io.SeqIOAdapter

addSequenceProperty

public void addSequenceProperty(Object key,
                       Object value)

Specified by:

addSequenceProperty in interface org.biojava.bio.seq.io.SeqIOListener

Overrides:

addSequenceProperty in class org.biojava.bio.seq.io.SeqIOAdapter

endFeature

public void endFeature()

Specified by:

endFeature in interface org.biojava.bio.seq.io.SeqIOListener

Overrides:

endFeature in class org.biojava.bio.seq.io.SeqIOAdapter

endSequence

public void endSequence()

Specified by:

endSequence in interface org.biojava.bio.seq.io.SeqIOListener

Overrides:

endSequence in class org.biojava.bio.seq.io.SeqIOAdapter

setName

public void setName(String name)

Specified by:

setName in interface org.biojava.bio.seq.io.SeqIOListener

Overrides:

setName in class org.biojava.bio.seq.io.SeqIOAdapter

startFeature

public void startFeature(org.biojava.bio.seq.Feature.Template feature)

Specified by:

startFeature in interface org.biojava.bio.seq.io.SeqIOListener

Overrides:

startFeature in class org.biojava.bio.seq.io.SeqIOAdapter

startSequence

public void startSequence()

Specified by:

startSequence in interface org.biojava.bio.seq.io.SeqIOListener

Overrides:

startSequence in class org.biojava.bio.seq.io.SeqIOAdapter

addSymbols

public void addSymbols(org.biojava.bio.symbol.Alphabet alpha,
              org.biojava.bio.symbol.Symbol[] syms,
              int start,
              int length)

Specified by:

addSymbols in interface org.biojava.bio.seq.io.SeqIOListener

Overrides:

addSymbols in class org.biojava.bio.seq.io.SeqIOAdapter