gff

Class GenbankToGffFasta

java.lang.Object

gff.GenbankToGffFasta

public class GenbankToGffFasta
extends Object

Converts a Genbank file into a fasta file for the sequence and a GFF file for the features.

This program demonstrates how to read in a Genbank file, how to write a fasta file and how to write GFF.

Use:
java GenbankToGffFasta genbankFile fastaOut gffOut

Based heavily off of EmblToGffFasta by Matthew Pocock. It was pretty much a global replace of 'embl' with 'genbank'.

Author:

Greg Cox

Constructor Summary

Constructors

Constructor and Description
GenbankToGffFasta()

Method Summary

Methods

Modifier and Type	Method and Description
static void	main(String[] args)

Methods inherited from class java.lang.Object

clone, equals, finalize, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait

Constructor Detail

GenbankToGffFasta

public GenbankToGffFasta()

Method Detail

main

public static void main(String[] args)
                 throws Exception

Throws:

Exception