| Class | Description |
|---|---|
| FetchSeq |
Fetch sequences by accession from the NCBI efetch server and dump them as genbank.
|
| GCContent |
Counts the GC content of a sequence in fasta format
|
| MotifFinder2 |
Modified version of MotifFinder.java
This program will search a fasta file for a motif.
|
| ReverseComplement |
Demo of reverse complementing a fasta DNA file
|
| SimpleAssemblyTest | |
| TestEmbl |
Demo reading an EMBL file
|
| TestEmbl2 |
Another EMBL demo
|
| TestGenbank |
Demo GenBank reading
|
| TestRefSeqPrt |
Demo of reading RefSeqProtein
|
| TestSubSequence |
Demo the use of SubSequence
|
| TestSwissprot |
SwissProt format has been replaced by Uniprot format.
|
| TestTranslation | |
| UniProtDemo |