ssaha

Class ResultPrinter

java.lang.Object

ssaha.ResultPrinter

All Implemented Interfaces:

org.biojava.bio.program.ssaha.SearchListener

public class ResultPrinter
extends Object
implements org.biojava.bio.program.ssaha.SearchListener

Nested Class Summary

Nested classes/interfaces inherited from interface org.biojava.bio.program.ssaha.SearchListener

org.biojava.bio.program.ssaha.SearchListener.Echo, org.biojava.bio.program.ssaha.SearchListener.FilterByLength, org.biojava.bio.program.ssaha.SearchListener.Tee, org.biojava.bio.program.ssaha.SearchListener.Wrapper

Constructor Summary

Constructors

Constructor and Description
ResultPrinter(org.biojava.bio.program.ssaha.DataStore dataStore)

Method Summary

Methods

Modifier and Type	Method and Description
void	endSearch(String seqID)
void	hit(int hitID, int queryOffset, int hitOffset, int hitLength)
void	startSearch(String seqID)

Methods inherited from class java.lang.Object

clone, equals, finalize, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait

Constructor Detail

ResultPrinter

public ResultPrinter(org.biojava.bio.program.ssaha.DataStore dataStore)

Method Detail

startSearch

public void startSearch(String seqID)

Specified by:

startSearch in interface org.biojava.bio.program.ssaha.SearchListener

endSearch

public void endSearch(String seqID)

Specified by:

endSearch in interface org.biojava.bio.program.ssaha.SearchListener

hit

public void hit(int hitID,
       int queryOffset,
       int hitOffset,
       int hitLength)

Specified by:

hit in interface org.biojava.bio.program.ssaha.SearchListener