ssbind

Class CountHits

java.lang.Object

org.biojava.bio.search.SearchContentAdapter

ssbind.CountHits

All Implemented Interfaces:

org.biojava.bio.search.SearchContentHandler

public class CountHits
extends org.biojava.bio.search.SearchContentAdapter

Prints out a count of the total number of hits in a report.

Example

 java ProcessBlastReport blast.out ssbind.CountHits
 

Author:

Matthew Pocock, Rahul Karnik

Constructor Summary

Constructors

Constructor and Description
CountHits()

Method Summary

Methods

Modifier and Type	Method and Description
void	endSearch()
void	startHit()
void	startSearch()

Methods inherited from class org.biojava.bio.search.SearchContentAdapter

addHitProperty, addSearchProperty, addSubHitProperty, endHeader, endHit, endSubHit, getMoreSearches, setDatabaseID, setMoreSearches, setQueryID, startHeader, startSubHit

Methods inherited from class java.lang.Object

clone, equals, finalize, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait

Constructor Detail

CountHits

public CountHits()

Method Detail

startSearch

public void startSearch()

Specified by:

startSearch in interface org.biojava.bio.search.SearchContentHandler

Overrides:

startSearch in class org.biojava.bio.search.SearchContentAdapter

endSearch

public void endSearch()

Specified by:

endSearch in interface org.biojava.bio.search.SearchContentHandler

Overrides:

endSearch in class org.biojava.bio.search.SearchContentAdapter

startHit

public void startHit()

Specified by:

startHit in interface org.biojava.bio.search.SearchContentHandler

Overrides:

startHit in class org.biojava.bio.search.SearchContentAdapter