ssbind

Class CountSubHits

java.lang.Object

org.biojava.bio.search.SearchContentAdapter

ssbind.CountSubHits

All Implemented Interfaces:

org.biojava.bio.search.SearchContentHandler

public class CountSubHits
extends org.biojava.bio.search.SearchContentAdapter

Prints out a count of the total number of sub hits in a report.

Example

 java ProcessBlastReport blast.out ssbind.CountSubHits
 

Author:

Matthew Pocock, Rahul Karnik

Constructor Summary

Constructors

Constructor and Description
CountSubHits()

Method Summary

Methods

Modifier and Type	Method and Description
void	endSearch()
void	startSearch()
void	startSubHit()

Methods inherited from class org.biojava.bio.search.SearchContentAdapter

addHitProperty, addSearchProperty, addSubHitProperty, endHeader, endHit, endSubHit, getMoreSearches, setDatabaseID, setMoreSearches, setQueryID, startHeader, startHit

Methods inherited from class java.lang.Object

clone, equals, finalize, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait

Constructor Detail

CountSubHits

public CountSubHits()

Method Detail

startSearch

public void startSearch()

Specified by:

startSearch in interface org.biojava.bio.search.SearchContentHandler

Overrides:

startSearch in class org.biojava.bio.search.SearchContentAdapter

endSearch

public void endSearch()

Specified by:

endSearch in interface org.biojava.bio.search.SearchContentHandler

Overrides:

endSearch in class org.biojava.bio.search.SearchContentAdapter

startSubHit

public void startSubHit()

Specified by:

startSubHit in interface org.biojava.bio.search.SearchContentHandler

Overrides:

startSubHit in class org.biojava.bio.search.SearchContentAdapter