ssbind

Class SubHitBuilder

java.lang.Object

org.biojava.bio.search.SearchContentFilter

ssbind.SubHitBuilder

All Implemented Interfaces:

org.biojava.bio.search.SearchContentHandler

public class SubHitBuilder
extends org.biojava.bio.search.SearchContentFilter

Build SeqSimilaritySearchSubHit instances from the sub hit info. Note: You must have an AlignmentBuilder in the chain before this handler

This will consume all the information necessary to build a SeqSimilaritySearchSubHit instance and then emit one under the key SubHitBuilder.SEARCH_SUB_HIT to the next handler in the chain.

Author:

Matthew Pocock

Field Summary

Fields

Modifier and Type	Field and Description
static Object	SEARCH_SUB_HIT

Constructor Summary

Constructors

Constructor and Description
SubHitBuilder(org.biojava.bio.search.SearchContentHandler delegate)

Method Summary

Methods

Modifier and Type	Method and Description
void	addSubHitProperty(Object key, Object val)
void	endSubHit()
void	startSubHit()

Methods inherited from class org.biojava.bio.search.SearchContentFilter

addHitProperty, addSearchProperty, endHeader, endHit, endSearch, getMoreSearches, setDatabaseID, setMoreSearches, setQueryID, startHeader, startHit, startSearch

Methods inherited from class java.lang.Object

clone, equals, finalize, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait

Field Detail

SEARCH_SUB_HIT

public static final Object SEARCH_SUB_HIT

Constructor Detail

SubHitBuilder

public SubHitBuilder(org.biojava.bio.search.SearchContentHandler delegate)

Method Detail

startSubHit

public void startSubHit()

Specified by:

startSubHit in interface org.biojava.bio.search.SearchContentHandler

Overrides:

startSubHit in class org.biojava.bio.search.SearchContentFilter

addSubHitProperty

public void addSubHitProperty(Object key,
                     Object val)

Specified by:

addSubHitProperty in interface org.biojava.bio.search.SearchContentHandler

Overrides:

addSubHitProperty in class org.biojava.bio.search.SearchContentFilter

endSubHit

public void endSubHit()

Specified by:

endSubHit in interface org.biojava.bio.search.SearchContentHandler

Overrides:

endSubHit in class org.biojava.bio.search.SearchContentFilter