| Class | Description |
|---|---|
| AlignmentBuilder |
This filter intercepts the querySequence and subjectSequence events to build
an alignment.
|
| CountHits |
Prints out a count of the total number of hits in a report.
|
| CountSubHits |
Prints out a count of the total number of sub hits in a report.
|
| Echoer |
Echo the event stream to stdout with prety indenting.
|
| FilterByValue |
Filter complete sub hits by the numerical value of some property.
|
| ListQueries |
Lists all query sequence names in the report.
|
| ListSubjects |
Lists all subject sequence names in the report.
|
| ProcessBlastReport |
Driver script that parses a blast report and pumps the result through a
configurable chain of filters and handlers.
|
| PropertyEchoer |
Print out the value of a single property.
|
| SubHitBuilder |
Build SeqSimilaritySearchSubHit instances from the sub hit info.
|
| SubHitFilter |
Abstract base class for things that will allow or disallow whole sub hit
messages through to the next handler.
|