symbol

Class WindowCount

java.lang.Object

symbol.WindowCount

public class WindowCount
extends Object

Title: WindowCount Description: A program to find the distribution of nmers in a fasta library Copyright: Copyright (c) 2001 Company: AgResearch

Version:

1.0

Author:

Mark Schreiber, Matthew Pocock

Constructor Summary

Constructors

Constructor and Description
WindowCount()

Method Summary

Methods

Modifier and Type	Method and Description
static void	main(String[] args)
static void	output(Double d, org.biojava.bio.symbol.AtomicSymbol s)
static org.biojava.bio.seq.db.SequenceDB	readSequenceDB(File seqFile, org.biojava.bio.symbol.Alphabet alpha) Create a sequence database from a fasta file.
static void	usage()

Methods inherited from class java.lang.Object

clone, equals, finalize, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait

Constructor Detail

WindowCount

public WindowCount()

Method Detail

main

public static void main(String[] args)

readSequenceDB

public static org.biojava.bio.seq.db.SequenceDB readSequenceDB(File seqFile,
                                               org.biojava.bio.symbol.Alphabet alpha)
                                                        throws Exception

Create a sequence database from a fasta file.

Throws:

Exception

output

public static void output(Double d,
          org.biojava.bio.symbol.AtomicSymbol s)

usage

public static void usage()