edu.ucla.stat.SOCR.analyses.model

Class FisherExact

java.lang.Object

edu.ucla.stat.SOCR.analyses.model.FisherExact

All Implemented Interfaces:

Analysis

public class FisherExact
extends java.lang.Object
implements Analysis

Field Summary

Fields

Modifier and Type	Field and Description
static java.lang.String	COL_NAMES
static java.lang.String	OBSERVED_DATA
static java.lang.String	ROW_NAMES
static java.lang.String	SIGNIFICANCE_LEVEL

Constructor Summary

Constructors

Constructor and Description
FisherExact()

Method Summary

Methods

Modifier and Type	Method and Description
Result	analyze(Data data, short analysisType)
double	ErrorMatrix(ContingencyTable A1, ContingencyTable A2)
double	get1TailPCutoff(ContingencyTable contTable, double p_naught)
double	get1TailPCutoffHigherOrder(ContingencyTable contTable, double p_naught)
double	get2TailPCutoff(ContingencyTable contTable, double p_naught)
double	get2TailPCutoffHigherOrder(ContingencyTable contTable, double p_naught)
java.lang.String	getAnalysisType()
ContingencyTable	getNewMaskMetropolisMatrix(ContingencyTable contTable, double p_naught)

Methods inherited from class java.lang.Object

clone, equals, finalize, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait

Field Detail

OBSERVED_DATA

public static final java.lang.String OBSERVED_DATA

See Also:

Constant Field Values

SIGNIFICANCE_LEVEL

public static final java.lang.String SIGNIFICANCE_LEVEL

See Also:

Constant Field Values

ROW_NAMES

public static final java.lang.String ROW_NAMES

See Also:

Constant Field Values

COL_NAMES

public static final java.lang.String COL_NAMES

See Also:

Constant Field Values

Constructor Detail

FisherExact

public FisherExact()

Method Detail

getAnalysisType

public java.lang.String getAnalysisType()

Specified by:

getAnalysisType in interface Analysis

analyze

public Result analyze(Data data,
             short analysisType)
               throws WrongAnalysisException,
                      DataIsEmptyException,
                      NumberTooBigException

Specified by:

analyze in interface Analysis

Throws:

WrongAnalysisException

DataIsEmptyException

NumberTooBigException

get1TailPCutoff

public double get1TailPCutoff(ContingencyTable contTable,
                     double p_naught)
                       throws NumberTooBigException

Throws:

NumberTooBigException

get2TailPCutoff

public double get2TailPCutoff(ContingencyTable contTable,
                     double p_naught)
                       throws NumberTooBigException

Throws:

NumberTooBigException

get1TailPCutoffHigherOrder

public double get1TailPCutoffHigherOrder(ContingencyTable contTable,
                                double p_naught)
                                  throws NumberTooBigException

Throws:

NumberTooBigException

get2TailPCutoffHigherOrder

public double get2TailPCutoffHigherOrder(ContingencyTable contTable,
                                double p_naught)
                                  throws NumberTooBigException

Throws:

NumberTooBigException

ErrorMatrix

public double ErrorMatrix(ContingencyTable A1,
                 ContingencyTable A2)

getNewMaskMetropolisMatrix

public ContingencyTable getNewMaskMetropolisMatrix(ContingencyTable contTable,
                                          double p_naught)
                                            throws NumberTooBigException

Throws:

NumberTooBigException