edu.ucla.stat.SOCR.distributome

Class ViewerApplet

java.lang.Object

java.awt.Component

java.awt.Container

java.awt.Panel

java.applet.Applet

javax.swing.JApplet

edu.ucla.stat.SOCR.distributome.ViewerApplet

All Implemented Interfaces:

java.awt.event.ActionListener, java.awt.event.KeyListener, java.awt.event.MouseListener, java.awt.image.ImageObserver, java.awt.MenuContainer, java.io.Serializable, java.util.EventListener, javax.accessibility.Accessible, javax.swing.RootPaneContainer

Direct Known Subclasses:

EditorApplet

public class ViewerApplet
extends javax.swing.JApplet
implements java.awt.event.ActionListener, java.awt.event.MouseListener, java.awt.event.KeyListener

See Also:

Serialized Form

Nested Class Summary

Nested classes/interfaces inherited from class javax.swing.JApplet

javax.swing.JApplet.AccessibleJApplet

Nested classes/interfaces inherited from class java.applet.Applet

java.applet.Applet.AccessibleApplet

Nested classes/interfaces inherited from class java.awt.Panel

java.awt.Panel.AccessibleAWTPanel

Nested classes/interfaces inherited from class java.awt.Container

java.awt.Container.AccessibleAWTContainer

Nested classes/interfaces inherited from class java.awt.Component

java.awt.Component.AccessibleAWTComponent, java.awt.Component.BaselineResizeBehavior, java.awt.Component.BltBufferStrategy, java.awt.Component.FlipBufferStrategy

Field Summary

Fields

Modifier and Type	Field and Description
protected javax.swing.JCheckBox	chb_freeze
protected static java.awt.Color	ControlBgColor
protected javax.swing.JPanel	controlPanel
protected static java.awt.Color	EdgeNormalColor
protected static java.awt.Color	EdgeTextColor
protected static java.awt.Color	EdgeTypeHighlightColor
protected javax.swing.JComboBox	freezeChoice
org.jgraph.JGraph	graph
protected static java.awt.Color	GraphBgColor
javax.swing.JScrollPane	graphPanel
protected static java.lang.String	HideNeighbor
protected javax.swing.JComboBox	highlightEdgeColorChoice
protected javax.swing.JComboBox	highlightNodeColorChoice
protected java.awt.TextArea	infoAreaMiddle
protected javax.swing.JPanel	infoAreaReference
protected LoadAndShowFormula	infoAreaUpper
protected javax.swing.JScrollPane	infoAreaUpperContainer
protected static java.awt.Color	InfoBgColor
protected static java.awt.Color	InfoBgColor2
protected javax.swing.JPanel	infoPanel
protected boolean	isWhiteSpacePicked
protected static int	MAXSEARCHLENGTH
protected static int	MAXVIEWABLENODES
protected javax.swing.JComboBox	neighbor_level
protected javax.swing.JComboBox	neighbours_level
protected static java.awt.Color	NodeBothColor
protected static java.awt.Color	NodeChildrenColor
protected static java.awt.Color	NodeHighlightColor
protected static java.awt.Color	NodeNormalColor
protected static java.awt.Color	NodeParentColor
protected static java.awt.Color	NodeTextColor
protected static java.awt.Color	NodeTypeHighlightColor
protected ViewerPanelInfo	panelInfo
protected javax.swing.JScrollPane	refContainer
protected javax.swing.JButton	refresh
protected java.lang.String	searchTerm
static ViewerApplet	selfRef
protected static java.lang.String	ShowBoth
protected static java.lang.String	ShowChildren
protected javax.swing.JComboBox	showHighlightedOnlyChoice
protected static java.lang.String	ShowParent
protected boolean	substringCheck
protected java.awt.TextField	textEntry
protected java.lang.String	urlPattern
protected boolean	wildCard
protected static int	XSIZE
protected static int	YSIZE
protected javax.swing.JComboBox	zoom_level
protected static java.lang.String	ZoomIn
protected static java.lang.String	ZoomOut
protected static java.lang.String	ZoomReset

Fields inherited from class javax.swing.JApplet

accessibleContext, rootPane, rootPaneCheckingEnabled

Fields inherited from class java.awt.Component

BOTTOM_ALIGNMENT, CENTER_ALIGNMENT, LEFT_ALIGNMENT, RIGHT_ALIGNMENT, TOP_ALIGNMENT

Fields inherited from interface java.awt.image.ImageObserver

ABORT, ALLBITS, ERROR, FRAMEBITS, HEIGHT, PROPERTIES, SOMEBITS, WIDTH

Constructor Summary

Constructors

Constructor and Description
ViewerApplet() CONSTRUCTOR

Method Summary

Methods

Modifier and Type	Method and Description
void	actionPerformed(java.awt.event.ActionEvent e) ActionListener implementation method
void	addEdgeCell(Edge _edge, int sourceCellId, int targetCellId)
void	addNodeCell(SOCRNode node, java.awt.Color bg)
void	clearInfoAreas()
void	clearScreen() clear screen method
org.jgraph.graph.DefaultGraphCell	createVertex(SOCRNode ob, double x, double y, double w, double h, java.awt.Color bg, boolean raised)
protected void	displayInitInfo()
int	findNodeCellId(int id)
int	findNodeIndex(int id)
void	getXMLInputFile()
void	hideNeighbor()
void	highlightEdgeType(int typeId)
void	highlightNodeAndNeighbors()
void	highlightNodeType(int typeId)
void	highlightSearchResult()
void	highlightSingleEdge()
void	init()
protected void	initControlPanel()
void	initGraph()
static boolean	isDebug()
void	keyPressed(java.awt.event.KeyEvent e) KeyListener implementation - for search field
void	keyReleased(java.awt.event.KeyEvent e) keyListener implement
void	keyTyped(java.awt.event.KeyEvent e) keyListener
void	mouseClicked(java.awt.event.MouseEvent e) handle right button mouse events separates for getting more detail on the protein node
void	mouseEntered(java.awt.event.MouseEvent e)
void	mouseExited(java.awt.event.MouseEvent e)
void	mousePressed(java.awt.event.MouseEvent e)
void	mouseReleased(java.awt.event.MouseEvent e)
protected void	resetControlPanel()
void	resetEdgeColor()
void	resetNodeColor()
void	setFreezedStatus(boolean in) destroy panel
void	showBoth(int pickedNodeIndex)
void	showChildren(int pickedNodeIndex)
void	showNeighbor()
void	showNodeUpdate()
void	showParents(int pickedNodeIndex)
protected void	showURL(java.lang.String urlString, java.lang.String window)
void	start() applet
void	stop() applet
void	updateInfoAreaUpper(java.net.URL url, java.lang.String formula)
protected void	zoominAt(org.jgraph.graph.CellView cell, double zoomFactor)

Methods inherited from class javax.swing.JApplet

addImpl, createRootPane, getAccessibleContext, getContentPane, getGlassPane, getGraphics, getJMenuBar, getLayeredPane, getRootPane, getTransferHandler, isRootPaneCheckingEnabled, paramString, remove, repaint, setContentPane, setGlassPane, setJMenuBar, setLayeredPane, setLayout, setRootPane, setRootPaneCheckingEnabled, setTransferHandler, update

Methods inherited from class java.applet.Applet

destroy, getAppletContext, getAppletInfo, getAudioClip, getAudioClip, getCodeBase, getDocumentBase, getImage, getImage, getLocale, getParameter, getParameterInfo, isActive, isValidateRoot, newAudioClip, play, play, resize, resize, setStub, showStatus

Methods inherited from class java.awt.Panel

addNotify

Methods inherited from class java.awt.Container

add, add, add, add, add, addContainerListener, addPropertyChangeListener, addPropertyChangeListener, applyComponentOrientation, areFocusTraversalKeysSet, countComponents, deliverEvent, doLayout, findComponentAt, findComponentAt, getAlignmentX, getAlignmentY, getComponent, getComponentAt, getComponentAt, getComponentCount, getComponents, getComponentZOrder, getContainerListeners, getFocusTraversalKeys, getFocusTraversalPolicy, getInsets, getLayout, getListeners, getMaximumSize, getMinimumSize, getMousePosition, getPreferredSize, insets, invalidate, isAncestorOf, isFocusCycleRoot, isFocusCycleRoot, isFocusTraversalPolicyProvider, isFocusTraversalPolicySet, layout, list, list, locate, minimumSize, paint, paintComponents, preferredSize, print, printComponents, processContainerEvent, processEvent, remove, removeAll, removeContainerListener, removeNotify, setComponentZOrder, setFocusCycleRoot, setFocusTraversalKeys, setFocusTraversalPolicy, setFocusTraversalPolicyProvider, setFont, transferFocusDownCycle, validate, validateTree

Methods inherited from class java.awt.Component

action, add, addComponentListener, addFocusListener, addHierarchyBoundsListener, addHierarchyListener, addInputMethodListener, addKeyListener, addMouseListener, addMouseMotionListener, addMouseWheelListener, bounds, checkImage, checkImage, coalesceEvents, contains, contains, createImage, createImage, createVolatileImage, createVolatileImage, disable, disableEvents, dispatchEvent, enable, enable, enableEvents, enableInputMethods, firePropertyChange, firePropertyChange, firePropertyChange, firePropertyChange, firePropertyChange, firePropertyChange, firePropertyChange, firePropertyChange, firePropertyChange, getBackground, getBaseline, getBaselineResizeBehavior, getBounds, getBounds, getColorModel, getComponentListeners, getComponentOrientation, getCursor, getDropTarget, getFocusCycleRootAncestor, getFocusListeners, getFocusTraversalKeysEnabled, getFont, getFontMetrics, getForeground, getGraphicsConfiguration, getHeight, getHierarchyBoundsListeners, getHierarchyListeners, getIgnoreRepaint, getInputContext, getInputMethodListeners, getInputMethodRequests, getKeyListeners, getLocation, getLocation, getLocationOnScreen, getMouseListeners, getMouseMotionListeners, getMousePosition, getMouseWheelListeners, getName, getParent, getPeer, getPropertyChangeListeners, getPropertyChangeListeners, getSize, getSize, getToolkit, getTreeLock, getWidth, getX, getY, gotFocus, handleEvent, hasFocus, hide, imageUpdate, inside, isBackgroundSet, isCursorSet, isDisplayable, isDoubleBuffered, isEnabled, isFocusable, isFocusOwner, isFocusTraversable, isFontSet, isForegroundSet, isLightweight, isMaximumSizeSet, isMinimumSizeSet, isOpaque, isPreferredSizeSet, isShowing, isValid, isVisible, keyDown, keyUp, list, list, list, location, lostFocus, mouseDown, mouseDrag, mouseEnter, mouseExit, mouseMove, mouseUp, move, nextFocus, paintAll, postEvent, prepareImage, prepareImage, printAll, processComponentEvent, processFocusEvent, processHierarchyBoundsEvent, processHierarchyEvent, processInputMethodEvent, processKeyEvent, processMouseEvent, processMouseMotionEvent, processMouseWheelEvent, remove, removeComponentListener, removeFocusListener, removeHierarchyBoundsListener, removeHierarchyListener, removeInputMethodListener, removeKeyListener, removeMouseListener, removeMouseMotionListener, removeMouseWheelListener, removePropertyChangeListener, removePropertyChangeListener, repaint, repaint, repaint, requestFocus, requestFocus, requestFocusInWindow, requestFocusInWindow, reshape, revalidate, setBackground, setBounds, setBounds, setComponentOrientation, setCursor, setDropTarget, setEnabled, setFocusable, setFocusTraversalKeysEnabled, setForeground, setIgnoreRepaint, setLocale, setLocation, setLocation, setMaximumSize, setMinimumSize, setName, setPreferredSize, setSize, setSize, setVisible, show, show, size, toString, transferFocus, transferFocusBackward, transferFocusUpCycle

Methods inherited from class java.lang.Object

clone, equals, finalize, getClass, hashCode, notify, notifyAll, wait, wait, wait

Field Detail

HideNeighbor

protected static final java.lang.String HideNeighbor

See Also:

Constant Field Values

ShowParent

protected static final java.lang.String ShowParent

See Also:

Constant Field Values

ShowChildren

protected static final java.lang.String ShowChildren

See Also:

Constant Field Values

ShowBoth

protected static final java.lang.String ShowBoth

See Also:

Constant Field Values

ZoomReset

protected static final java.lang.String ZoomReset

See Also:

Constant Field Values

ZoomIn

protected static final java.lang.String ZoomIn

See Also:

Constant Field Values

ZoomOut

protected static final java.lang.String ZoomOut

See Also:

Constant Field Values

MAXVIEWABLENODES

protected static final int MAXVIEWABLENODES

See Also:

Constant Field Values

MAXSEARCHLENGTH

protected static final int MAXSEARCHLENGTH

See Also:

Constant Field Values

isWhiteSpacePicked

protected boolean isWhiteSpacePicked

XSIZE

protected static final int XSIZE

See Also:

Constant Field Values

YSIZE

protected static final int YSIZE

See Also:

Constant Field Values

ControlBgColor

protected static final java.awt.Color ControlBgColor

InfoBgColor

protected static final java.awt.Color InfoBgColor

InfoBgColor2

protected static final java.awt.Color InfoBgColor2

GraphBgColor

protected static final java.awt.Color GraphBgColor

NodeTextColor

protected static final java.awt.Color NodeTextColor

EdgeTextColor

protected static final java.awt.Color EdgeTextColor

NodeHighlightColor

protected static final java.awt.Color NodeHighlightColor

NodeParentColor

protected static final java.awt.Color NodeParentColor

NodeChildrenColor

protected static final java.awt.Color NodeChildrenColor

NodeBothColor

protected static final java.awt.Color NodeBothColor

NodeTypeHighlightColor

protected static final java.awt.Color NodeTypeHighlightColor

NodeNormalColor

protected static final java.awt.Color NodeNormalColor

EdgeTypeHighlightColor

protected static final java.awt.Color EdgeTypeHighlightColor

EdgeNormalColor

protected static final java.awt.Color EdgeNormalColor

selfRef

public static ViewerApplet selfRef

graphPanel

public javax.swing.JScrollPane graphPanel

controlPanel

protected javax.swing.JPanel controlPanel

infoPanel

protected javax.swing.JPanel infoPanel

infoAreaMiddle

protected java.awt.TextArea infoAreaMiddle

infoAreaUpper

protected LoadAndShowFormula infoAreaUpper

infoAreaUpperContainer

protected javax.swing.JScrollPane infoAreaUpperContainer

infoAreaReference

protected javax.swing.JPanel infoAreaReference

refContainer

protected javax.swing.JScrollPane refContainer

panelInfo

protected ViewerPanelInfo panelInfo

neighbours_level

protected javax.swing.JComboBox neighbours_level

zoom_level

protected javax.swing.JComboBox zoom_level

highlightNodeColorChoice

protected javax.swing.JComboBox highlightNodeColorChoice

highlightEdgeColorChoice

protected javax.swing.JComboBox highlightEdgeColorChoice

neighbor_level

protected javax.swing.JComboBox neighbor_level

freezeChoice

protected javax.swing.JComboBox freezeChoice

refresh

protected javax.swing.JButton refresh

showHighlightedOnlyChoice

protected javax.swing.JComboBox showHighlightedOnlyChoice

searchTerm

protected java.lang.String searchTerm

textEntry

protected java.awt.TextField textEntry

substringCheck

protected boolean substringCheck

wildCard

protected boolean wildCard

chb_freeze

protected javax.swing.JCheckBox chb_freeze

urlPattern

protected final java.lang.String urlPattern

See Also:

Constant Field Values

graph

public org.jgraph.JGraph graph

Constructor Detail

ViewerApplet

public ViewerApplet()

CONSTRUCTOR

Method Detail

start

public void start()

applet

Overrides:

start in class java.applet.Applet

stop

public void stop()

applet

Overrides:

stop in class java.applet.Applet

init

public void init()

Overrides:

init in class java.applet.Applet

addNodeCell

public void addNodeCell(SOCRNode node,
               java.awt.Color bg)

addEdgeCell

public void addEdgeCell(Edge _edge,
               int sourceCellId,
               int targetCellId)

createVertex

public org.jgraph.graph.DefaultGraphCell createVertex(SOCRNode ob,
                                             double x,
                                             double y,
                                             double w,
                                             double h,
                                             java.awt.Color bg,
                                             boolean raised)

initControlPanel

protected void initControlPanel()

resetControlPanel

protected void resetControlPanel()

getXMLInputFile

public void getXMLInputFile()

displayInitInfo

protected void displayInitInfo()

initGraph

public void initGraph()

findNodeIndex

public int findNodeIndex(int id)

findNodeCellId

public int findNodeCellId(int id)

actionPerformed

public void actionPerformed(java.awt.event.ActionEvent e)

ActionListener implementation method

Specified by:

actionPerformed in interface java.awt.event.ActionListener

clearInfoAreas

public void clearInfoAreas()

updateInfoAreaUpper

public void updateInfoAreaUpper(java.net.URL url,
                       java.lang.String formula)

resetNodeColor

public void resetNodeColor()

resetEdgeColor

public void resetEdgeColor()

clearScreen

public void clearScreen()

clear screen method

setFreezedStatus

public void setFreezedStatus(boolean in)

destroy panel

showNodeUpdate

public void showNodeUpdate()

mouseClicked

public void mouseClicked(java.awt.event.MouseEvent e)

handle right button mouse events separates for getting more detail on the protein node

Specified by:

mouseClicked in interface java.awt.event.MouseListener

keyPressed

public void keyPressed(java.awt.event.KeyEvent e)

KeyListener implementation - for search field

Specified by:

keyPressed in interface java.awt.event.KeyListener

keyReleased

public void keyReleased(java.awt.event.KeyEvent e)

keyListener implement

Specified by:

keyReleased in interface java.awt.event.KeyListener

keyTyped

public void keyTyped(java.awt.event.KeyEvent e)

keyListener

Specified by:

keyTyped in interface java.awt.event.KeyListener

zoominAt

protected void zoominAt(org.jgraph.graph.CellView cell,
            double zoomFactor)

showNeighbor

public void showNeighbor()

showBoth

public void showBoth(int pickedNodeIndex)

showParents

public void showParents(int pickedNodeIndex)

showChildren

public void showChildren(int pickedNodeIndex)

hideNeighbor

public void hideNeighbor()

highlightNodeAndNeighbors

public void highlightNodeAndNeighbors()

highlightSearchResult

public void highlightSearchResult()

highlightNodeType

public void highlightNodeType(int typeId)

highlightSingleEdge

public void highlightSingleEdge()

highlightEdgeType

public void highlightEdgeType(int typeId)

showURL

protected void showURL(java.lang.String urlString,
           java.lang.String window)

mouseEntered

public void mouseEntered(java.awt.event.MouseEvent e)

Specified by:

mouseEntered in interface java.awt.event.MouseListener

mouseExited

public void mouseExited(java.awt.event.MouseEvent e)

Specified by:

mouseExited in interface java.awt.event.MouseListener

mousePressed

public void mousePressed(java.awt.event.MouseEvent e)

Specified by:

mousePressed in interface java.awt.event.MouseListener

mouseReleased

public void mouseReleased(java.awt.event.MouseEvent e)

Specified by:

mouseReleased in interface java.awt.event.MouseListener

isDebug

public static boolean isDebug()