Package visad.bio

VisBio: a multi-purpose biological analysis tool

See:
Description

Interface Summary

PlaneListener

Interface for listeners notified when PlaneSelector plane is modified.

Class Summary

AlignmentPlane	AlignmentPlane maintains an arbitrary plane specifying a spatial alignment in 3-D.
AlignToolPanel	AlignToolPanel is the tool panel for managing image alignment, spacing and drift correction.
ArbitrarySlice	ArbitrarySlice is a plane selector that specifies an arbitrary slice through a 3-D box.
BioAnimWidget	BioAnimWidget is a simple widget for controlling animation.
BioColorWidget	BioColorWidget is a widget for controlling mappings from range scalars to color scalars.
BioHelpWindow	BioHelpWindow details basic VisBio program usage.
BioSpinWidget	BioSpinWidget is a simple widget for controlling animation.
BioStepWidget	BioStepWidget is a slider GUI component with directional step arrows at either end, used by VisBio.
BioUtil	BioUtil provides a collection of general utilities used by VisBio.
ColorBar	ColorBar is a bar of color designed to represent color graphically.
ColorRenderer	ColorRenderer is a JComboBox renderer that uses ColorBars.
ColorToolPanel	ColorToolPanel is the tool panel for adjusting viewing parameters.
DoubleTextCheckBox	A checkbox with two text fields.
ExportDialog	ExportDialog provides a set of options for exporting a 4-D data series.
FileSeriesWidget	FileSeriesWidget is a GUI component for stepping through data from a series of files.
GroupDialog	GroupDialog provides a mechanism for selecting a series of files.
ImageStackWidget	ImageStackWidget is a GUI component for stepping through an image stack.
ImportDialog	ImportDialog provides a set of options for importing a 4-D data series.
MeasureGroup	MeasureGroup represents a possible grouping for measurements.
MeasureLine	A connecting line in the list of measurements.
MeasureList	MeasureList maintains a list of measurements between points in a field.
MeasureManager	MeasureManager is the class encapsulating VisBio's measurement logic.
MeasurePoint	An endpoint in the list of measurements.
MeasurePool	MeasurePool maintains a pool of manipulable points and a set of connecting lines, for interactive data measurement in the given display.
MeasureThing	MeasureThing is the base class for measurement constructs such as lines and points.
MeasureToolPanel	MeasureToolPanel is the tool panel for managing measurements between data points.
MultiLUT
OptionDialog	OptionDialog is a dialog of configuring VisBio options.
PlaneSelector	PlaneSelector maintains a data structure of three endpoints that can be manipulated by the user to specify an arbitrary plane in 3-D.
PoolPoint	PoolPoint is a single measurement pool endpoint.
ProgressDialog	ProgressDialog is a modal dialog displaying a progress bar.
QTFileFilter	A file filter for finding QTJava.zip, for use with OptionDialog.
SeriesChooser	SeriesChooser provides a mechanism for specifying a 4-D data series.
SeriesFileFilter	A file filter for identifying data series.
SliceManager	SliceManager is the class encapsulating VisBio's slice logic.
StateManager	StateManager contains information needed to recreate a VisBio program state, in the case of a program crash or other error.
ToolPanel	ToolPanel is the superclass of all tool panel types.
ViewToolPanel	ViewToolPanel is the tool panel for adjusting viewing parameters.
VisBio	VisBio is a multi-purpose biological analysis tool.

Package visad.bio Description

VisBio: a multi-purpose biological analysis tool

VisBio provides multi-dimensional visualization of an image or stack of images across time, arbitrary slicing of the data, and measurement tools.