Here is a list of all files with brief descriptions:

AggregateWaveModel.cpp
AggregateWaveModel.h
AlignmentModel.cpp
AlignmentModel.h
AudioFileReader.cpp
AudioFileReader.h
AudioFileReaderFactory.cpp
AudioFileReaderFactory.h
AudioLevel.cpp
AudioLevel.h
AudioPlaySource.h
BZipFileDevice.cpp
BZipFileDevice.h
CachedFile.cpp
CachedFile.h
Clipboard.cpp
Clipboard.h
CodedAudioFileReader.cpp
CodedAudioFileReader.h
Command.cpp
Command.h
CoreAudioFileReader.cpp
CoreAudioFileReader.h
CSVFeatureWriter.cpp
CSVFeatureWriter.h
CSVFileReader.cpp
CSVFileReader.h
CSVFileWriter.cpp
CSVFileWriter.h
CSVFormat.cpp
CSVFormat.h
DataFileReader.h
DataFileReaderFactory.cpp
DataFileReaderFactory.h
Debug.cpp
Debug.h
DecodingWavFileReader.cpp
DecodingWavFileReader.h
Dense3DModelPeakCache.cpp
Dense3DModelPeakCache.h
DenseThreeDimensionalModel.h
DenseTimeValueModel.cpp
DenseTimeValueModel.h
DSSIPluginFactory.cpp
DSSIPluginFactory.h
DSSIPluginInstance.cpp
DSSIPluginInstance.h
EditableDenseThreeDimensionalModel.cpp
EditableDenseThreeDimensionalModel.h
Exceptions.cpp
Exceptions.h
FeatureExtractionModelTransformer.cpp
FeatureExtractionModelTransformer.h
FeatureExtractionPluginFactory.cpp
FeatureExtractionPluginFactory.h
FeatureWriter.h
FFTapi.cpp
FFTapi.h
FFTCacheReader.h
FFTCacheStorageType.h
FFTCacheWriter.h
FFTDataServer.cpp
FFTDataServer.h
FFTFileCacheReader.cpp
FFTFileCacheReader.h
FFTFileCacheWriter.cpp
FFTFileCacheWriter.h
FFTFuzzyAdapter.cpp
FFTFuzzyAdapter.h
FFTMemoryCache.cpp
FFTMemoryCache.h
FFTModel.cpp
FFTModel.h
FileFeatureWriter.cpp
FileFeatureWriter.h
FileFinder.h
FileReadThread.cpp
FileReadThread.h
FileSource.cpp
FileSource.h
FlexiNoteModel.h
FrameTimer.h
ImageModel.h
Init.cpp
Init.h
IntervalModel.h
Labeller.h
LADSPAPluginFactory.cpp
LADSPAPluginFactory.h
LADSPAPluginInstance.cpp
LADSPAPluginInstance.h
LogRange.cpp
LogRange.h
MatchFileReader.cpp
MatchFileReader.h
MatrixFile.cpp
MatrixFile.h
MIDIEvent.h
MIDIFileReader.cpp
MIDIFileReader.h
MIDIFileWriter.cpp
MIDIFileWriter.h
MIDIInput.cpp
MIDIInput.h
Model.cpp
Model.h
ModelDataTableModel.cpp
ModelDataTableModel.h
ModelTransformer.cpp
ModelTransformer.h
ModelTransformerFactory.cpp
ModelTransformerFactory.h
MP3FileReader.cpp
MP3FileReader.h
NoteData.h
NoteModel.h
OggVorbisFileReader.cpp
OggVorbisFileReader.h
OSCMessage.cpp
OSCMessage.h
OSCQueue.cpp
OSCQueue.h
PathModel.h
Pitch.cpp
Pitch.h
Playable.h
PlaylistFileReader.cpp
PlaylistFileReader.h
PlayParameterRepository.cpp
PlayParameterRepository.h
PlayParameters.cpp
PlayParameters.h
PluginIdentifier.cpp
PluginIdentifier.h
PluginRDFDescription.cpp
PluginRDFDescription.h
PluginRDFIndexer.cpp
PluginRDFIndexer.h
PluginXml.cpp
PluginXml.h
PowerOfSqrtTwoZoomConstraint.cpp
PowerOfSqrtTwoZoomConstraint.h
PowerOfTwoZoomConstraint.cpp
PowerOfTwoZoomConstraint.h
Preferences.cpp
Preferences.h
Profiler.cpp
Profiler.h
ProgressPrinter.cpp
ProgressPrinter.h
ProgressReporter.cpp
ProgressReporter.h
PropertyContainer.cpp
PropertyContainer.h
QuickTimeFileReader.cpp
QuickTimeFileReader.h
RangeMapper.cpp
RangeMapper.h
RangeSummarisableTimeValueModel.cpp
RangeSummarisableTimeValueModel.h
RDFExporter.cpp
RDFExporter.h
RDFFeatureWriter.cpp
RDFFeatureWriter.h
RDFImporter.cpp
RDFImporter.h
RDFTransformFactory.cpp
RDFTransformFactory.h
RealTime.cpp
RealTime.h
RealTimeEffectModelTransformer.cpp
RealTimeEffectModelTransformer.h
RealTimePluginFactory.cpp
RealTimePluginFactory.h
RealTimePluginInstance.cpp
RealTimePluginInstance.h
RecentFiles.cpp
RecentFiles.h
RegionModel.h
Resampler.cpp
Resampler.h
ResizeableBitset.h
ResourceFinder.cpp
ResourceFinder.h
RingBuffer.h
SamplePlayer.cpp
SamplePlayer.h
Scavenger.h
Selection.cpp
Selection.h
Serialiser.cpp
Serialiser.h
SparseModel.h
SparseOneDimensionalModel.h
SparseTimeValueModel.h
SparseValueModel.h
StorageAdviser.cpp
StorageAdviser.h
StringBits.cpp
StringBits.h
System.cpp
System.h
TabularModel.h
TempDirectory.cpp
TempDirectory.h
TempWriteFile.cpp
TempWriteFile.h
TextMatcher.cpp
TextMatcher.h
TextModel.h
Thread.cpp
Thread.h
Transform.cpp
Transform.h
TransformDescription.h
TransformFactory.cpp
TransformFactory.h
UnitDatabase.cpp
UnitDatabase.h
ViewManagerBase.cpp
ViewManagerBase.h
WaveFileModel.cpp
WaveFileModel.h
WavFileReader.cpp
WavFileReader.h
WavFileWriter.cpp
WavFileWriter.h
Window.h
WritableWaveFileModel.cpp
WritableWaveFileModel.h
XmlExportable.cpp
XmlExportable.h
ZoomConstraint.h