| AbsoluteScale enum value | Colour3DPlotLayer | |
| addMeasurementRect(const QXmlAttributes &) | Layer | virtual |
| addMeasureRectToSet(const MeasureRect &r) | Layer | inlineprotected |
| addNote(View *, QMouseEvent *) | Layer | inlinevirtual |
| alignFromReference(View *v, int frame) const | Layer | protectedvirtual |
| alignToReference(View *v, int frame) const | Layer | protectedvirtual |
| BinScale enum name | Colour3DPlotLayer | |
| cacheInvalid() | Colour3DPlotLayer | protectedslot |
| cacheInvalid(int startFrame, int endFrame) | Colour3DPlotLayer | protectedslot |
| clipboardHasDifferentAlignment(View *v, const Clipboard &clip) const | Layer | protected |
| Colour3DPlotLayer() | Colour3DPlotLayer | |
| ColourAbsent enum value | Layer | |
| ColourAndBackgroundSignificant enum value | Layer | |
| ColourDistinguishes enum value | Layer | |
| ColourHasMeaningfulValue enum value | Layer | |
| ColourIrrelevant enum value | Layer | |
| ColourScale enum name | Colour3DPlotLayer | |
| ColourSignificance enum name | Layer | |
| connectSignals(const Model *) | Layer | protected |
| copy(View *, Selection, Clipboard &) | Layer | inlinevirtual |
| deleteCurrentMeasureRect() | Layer | virtual |
| deleteMeasureRectFromSet(const MeasureRect &r) | Layer | inlineprotected |
| deleteSelection(Selection) | Layer | inlinevirtual |
| drawDrag(View *, QMouseEvent *) | Layer | inlinevirtual |
| drawEnd(View *, QMouseEvent *) | Layer | inlinevirtual |
| drawStart(View *, QMouseEvent *) | Layer | inlinevirtual |
| editDrag(View *, QMouseEvent *) | Layer | inlinevirtual |
| editEnd(View *, QMouseEvent *) | Layer | inlinevirtual |
| editOpen(View *, QMouseEvent *) | Layer | inlinevirtual |
| editStart(View *, QMouseEvent *) | Layer | inlinevirtual |
| eraseDrag(View *, QMouseEvent *) | Layer | inlinevirtual |
| eraseEnd(View *, QMouseEvent *) | Layer | inlinevirtual |
| eraseStart(View *, QMouseEvent *) | Layer | inlinevirtual |
| fillCache(int firstBin, int lastBin) const | Colour3DPlotLayer | protected |
| findFocusedMeasureRect(QPoint) const | Layer | protected |
| getBinForY(View *, float y) const | Colour3DPlotLayer | protected |
| getBinScale() const | Colour3DPlotLayer | |
| getColourMap() const | Colour3DPlotLayer | |
| getColourScale() const | Colour3DPlotLayer | inline |
| getColourScaleWidth(QPainter &) const | Colour3DPlotLayer | protected |
| getColumn(int col) const | Colour3DPlotLayer | protected |
| getCompletion(View *) const | Colour3DPlotLayer | inlinevirtual |
| getCrosshairExtents(View *, QPainter &, QPoint, std::vector< QRect > &) const | Layer | inlinevirtual |
| getCurrentVerticalZoomStep() const | Colour3DPlotLayer | virtual |
| getDisplayExtents(float &min, float &max) const | Colour3DPlotLayer | virtual |
| getError(View *) const | Layer | inlinevirtual |
| getFeatureDescription(View *v, QPoint &) const | Colour3DPlotLayer | virtual |
| getGain() const | Colour3DPlotLayer | |
| getInvertVertical() const | Colour3DPlotLayer | |
| getLabelPreceding(int) const | Layer | inlinevirtual |
| getLayerColourSignificance() const | Colour3DPlotLayer | inlinevirtual |
| getLayerPresentationName() const | Layer | virtual |
| getLayerPresentationPixmap(QSize) const | Layer | inlinevirtual |
| getModel() const | Colour3DPlotLayer | inlinevirtual |
| SliceableLayer::getModel() | Layer | inline |
| getNewPropertyRangeMapper(const PropertyName &) const | Colour3DPlotLayer | virtual |
| getNewVerticalZoomRangeMapper() const | Colour3DPlotLayer | virtual |
| getNormalizeColumns() const | Colour3DPlotLayer | |
| getNormalizeHybrid() const | Colour3DPlotLayer | |
| getNormalizeVisibleArea() const | Colour3DPlotLayer | |
| getOpaque() const | Colour3DPlotLayer | |
| getPlayParameters() | Layer | virtual |
| getPreferredFrameCountPosition() const | Layer | inlinevirtual |
| getPreferredTimeRulerPosition() const | Layer | inlinevirtual |
| getProperties() const | Colour3DPlotLayer | virtual |
| getPropertyContainerIconName() const | Layer | virtual |
| getPropertyContainerName() const | Layer | inlinevirtual |
| getPropertyGroupName(const PropertyName &) const | Colour3DPlotLayer | virtual |
| getPropertyIconName(const PropertyName &) const | Colour3DPlotLayer | virtual |
| getPropertyLabel(const PropertyName &) const | Colour3DPlotLayer | virtual |
| getPropertyRangeAndValue(const PropertyName &, int *min, int *max, int *deflt) const | Colour3DPlotLayer | virtual |
| getPropertyType(const PropertyName &) const | Colour3DPlotLayer | virtual |
| getPropertyValueLabel(const PropertyName &, int value) const | Colour3DPlotLayer | virtual |
| getSliceableModel() const | Colour3DPlotLayer | inlinevirtual |
| getSmooth() const | Colour3DPlotLayer | |
| getValueExtents(float &min, float &max, bool &logarithmic, QString &unit) const | Colour3DPlotLayer | virtual |
| getVerticalScaleWidth(View *v, bool, QPainter &) const | Colour3DPlotLayer | virtual |
| getVerticalZoomSteps(int &defaultStep) const | Colour3DPlotLayer | virtual |
| getXScaleValue(const View *v, int x, float &value, QString &unit) const | Layer | virtual |
| getYForBin(View *, float bin) const | Colour3DPlotLayer | protected |
| getYScaleDifference(const View *v, int y0, int y1, float &diff, QString &unit) const | Layer | virtual |
| getYScaleValue(const View *, int, float &, QString &) const | Colour3DPlotLayer | virtual |
| getZoomConstraint() const | Colour3DPlotLayer | inlinevirtual |
| hasLightBackground() const | Layer | inlinevirtual |
| hasTimeXAxis() const | Layer | inlinevirtual |
| haveCurrentMeasureRect() const | Layer | inlinevirtual |
| isLayerDormant(const View *v) const | Layer | virtual |
| isLayerEditable() const | Layer | inlinevirtual |
| isLayerOpaque() const | Layer | inlinevirtual |
| isLayerScrollable(const View *v) const | Colour3DPlotLayer | virtual |
| Layer() | Layer | |
| layerMeasurementRectsChanged() | Layer | signal |
| layerNameChanged() | Layer | signal |
| layerParameterRangesChanged() | Layer | signal |
| layerParametersChanged() | Layer | signal |
| LinearBinScale enum value | Colour3DPlotLayer | |
| LinearScale enum value | Colour3DPlotLayer | |
| LogBinScale enum value | Colour3DPlotLayer | |
| LogScale enum value | Colour3DPlotLayer | |
| m_binScale | Colour3DPlotLayer | protected |
| m_cache | Colour3DPlotLayer | mutableprotected |
| m_cacheValidEnd | Colour3DPlotLayer | mutableprotected |
| m_cacheValidStart | Colour3DPlotLayer | mutableprotected |
| m_colourMap | Colour3DPlotLayer | protected |
| m_colourScale | Colour3DPlotLayer | protected |
| m_colourScaleSet | Colour3DPlotLayer | protected |
| m_currentMeasureRectPoint | Layer | mutableprotected |
| m_draggingRect | Layer | protected |
| m_gain | Colour3DPlotLayer | protected |
| m_haveCurrentMeasureRect | Layer | mutableprotected |
| m_haveDraggingRect | Layer | protected |
| m_invertVertical | Colour3DPlotLayer | protected |
| m_maxy | Colour3DPlotLayer | protected |
| m_measureRects | Layer | protected |
| m_miny | Colour3DPlotLayer | protected |
| m_model | Colour3DPlotLayer | protected |
| m_normalizeColumns | Colour3DPlotLayer | protected |
| m_normalizeHybrid | Colour3DPlotLayer | protected |
| m_normalizeVisibleArea | Colour3DPlotLayer | protected |
| m_opaque | Colour3DPlotLayer | protected |
| m_peakResolution | Colour3DPlotLayer | protected |
| m_peaksCache | Colour3DPlotLayer | mutableprotected |
| m_presentationName | Layer | protected |
| m_smooth | Colour3DPlotLayer | protected |
| measureDoubleClick(View *, QMouseEvent *) | Layer | virtual |
| measureDrag(View *, QMouseEvent *) | Layer | virtual |
| measureEnd(View *, QMouseEvent *) | Layer | virtual |
| MeasureRectSet typedef | Layer | protected |
| measureStart(View *, QMouseEvent *) | Layer | virtual |
| modelAlignmentCompletionChanged() | Layer | signal |
| modelChanged() | Colour3DPlotLayer | protectedslot |
| modelChangedWithin(int, int) | Colour3DPlotLayer | protectedslot |
| modelCompletionChanged() | Layer | signal |
| modelReplaced() | Layer | signal |
| moveSelection(Selection, int) | Layer | inlinevirtual |
| nearestMeasurementRectChanged(View *, QPoint prev, QPoint now) const | Layer | virtual |
| needsTextLabelHeight() const | Layer | inlinevirtual |
| paint(View *v, QPainter &paint, QRect rect) const | Colour3DPlotLayer | virtual |
| paintCrosshairs(View *, QPainter &, QPoint) const | Layer | inlinevirtual |
| paintDense(View *v, QPainter &paint, QRect rect) const | Colour3DPlotLayer | protected |
| paintMeasurementRect(View *v, QPainter &paint, const MeasureRect &r, bool focus) const | Layer | protected |
| paintMeasurementRects(View *, QPainter &, bool showFocus, QPoint focusPoint) const | Layer | virtual |
| paintVerticalScale(View *v, bool, QPainter &paint, QRect rect) const | Colour3DPlotLayer | virtual |
| paste(View *, const Clipboard &, int, bool) | Layer | inlinevirtual |
| PlusMinusOneScale enum value | Colour3DPlotLayer | |
| PositionBottom enum value | Layer | |
| PositionMiddle enum value | Layer | |
| PositionTop enum value | Layer | |
| resizeSelection(Selection, Selection) | Layer | inlinevirtual |
| setBinScale(BinScale) | Colour3DPlotLayer | |
| setColourMap(int map) | Colour3DPlotLayer | |
| setColourScale(ColourScale) | Colour3DPlotLayer | |
| setDisplayExtents(float min, float max) | Colour3DPlotLayer | virtual |
| setGain(float gain) | Colour3DPlotLayer | |
| setInvertVertical(bool i) | Colour3DPlotLayer | |
| setLayerDormant(const View *v, bool dormant) | Colour3DPlotLayer | virtual |
| setMeasureRectFromPixrect(View *v, MeasureRect &r, QRect pixrect) const | Layer | protectedvirtual |
| setMeasureRectYCoord(View *v, MeasureRect &r, bool start, int y) const | Layer | protectedvirtual |
| setModel(const DenseThreeDimensionalModel *model) | Colour3DPlotLayer | |
| setNormalizeColumns(bool n) | Colour3DPlotLayer | |
| setNormalizeHybrid(bool n) | Colour3DPlotLayer | |
| setNormalizeVisibleArea(bool n) | Colour3DPlotLayer | |
| setObjectName(const QString &name) | Layer | virtual |
| setOpaque(bool i) | Colour3DPlotLayer | |
| setPresentationName(QString name) | Layer | virtual |
| setProperties(const QXmlAttributes &) | Colour3DPlotLayer | virtual |
| setProperty(const PropertyName &, int value) | Colour3DPlotLayer | virtual |
| setSmooth(bool i) | Colour3DPlotLayer | |
| setSynchronousPainting(bool) | Layer | inlinevirtual |
| setVerticalZoomStep(int) | Colour3DPlotLayer | virtual |
| shouldPaintDenseIn(const View *) const | Colour3DPlotLayer | protected |
| showLayer(View *, bool show) | Layer | slot |
| sliceableModelReplaced(const Model *modelToBeReplaced, const Model *replacement) | SliceableLayer | signal |
| SnapLeft enum value | Layer | |
| SnapNearest enum value | Layer | |
| SnapNeighbouring enum value | Layer | |
| SnapRight enum value | Layer | |
| snapToFeatureFrame(View *v, int &frame, int &resolution, SnapType snap) const | Colour3DPlotLayer | virtual |
| snapToSimilarFeature(View *, int &, int &resolution, SnapType) const | Layer | inlinevirtual |
| SnapType enum name | Layer | |
| splitEnd(View *, QMouseEvent *) | Layer | inlinevirtual |
| splitStart(View *, QMouseEvent *) | Layer | inlinevirtual |
| supportsOtherZoomLevels() const | Layer | inlinevirtual |
| toBriefXml(QTextStream &stream, QString indent="", QString extraAttributes="") const | Layer | virtual |
| toXml(QTextStream &stream, QString indent="", QString extraAttributes="") const | Colour3DPlotLayer | virtual |
| updateMeasurePixrects(View *v) const | Layer | protected |
| updateMeasureRectYCoords(View *v, const MeasureRect &r) const | Layer | protectedvirtual |
| VerticalPosition enum name | Layer | |
| verticalZoomChanged() | Layer | signal |
| ~Colour3DPlotLayer() | Colour3DPlotLayer | |
| ~Layer() | Layer | virtual |