Package org.simmetrics.metrics.functions

Interface Summary

Interface	Description
Gap	A gap function assigns penalty to the creation of a gap in a string when matching against another string.
Substitution	A substitution function assigns value to the substitution of one character for another matching against another string.

Class Summary

Class	Description
AffineGap	A gap function that calculates the gap penalty as A+(B * GapLegth).
ConstantGap	A gap function that assigns a constant penalty to a gap regardless of size.
LinearGap	A gap function that takes into account the length the gap.
MatchMismatch	A substitution function that assigns one value to equal characters, another value to unequal characters.