NeuroMLCoreCompTypes |
| NeuroML2 ComponentType definitions from NeuroMLCoreCompTypes.xml |
| Original LEMS ComponentType definitions: NeuroMLCoreCompTypes.xml Schema against which NeuroML based on these should be valid: NeuroML_v2.0.xsd |
| notes | ||
| Human readable notes on a Component |
| annotation | ||
| Annotation... | ||
| Child elements | rdf:RDF | rdf_RDF | Children elements | property | property |
| property | ||
| Property in Annotation... | ||
| Text fields | tag | value |
| baseStandalone | ||
| Base type of any component which will require notes, annotation, etc. | ||
| Child elements | notes | notes | annotation | annotation | Children elements | property | property |
| rdf_RDF | ||
| Work in progress... | ||
| Text fields | xmlns:rdf | |
| Child elements | rdf:Description | rdf_Description |
| rdf_Description | ||
| Work in progress... | ||
| Text fields | rdf:about | |
| Child elements | bqbiol:encodes | bqbiol_encodes | bqbiol:hasPart | bqbiol_hasPart | bqbiol:isEncodedBy | bqbiol_isEncodedBy | bqbiol:occursIn | bqbiol_occursIn | bqbiol:isVersionOf | bqbiol_isVersionOf | bqbiol:hasVersion | bqbiol_hasVersion | bqbiol:isPartOf | bqbiol_isPartOf | bqbiol:hasTaxon | bqbiol_hasTaxon | bqbiol:is | bqbiol_is | bqbiol:isDescribedBy | bqbiol_isDescribedBy | bqbiol:isPropertyOf | bqbiol_isPropertyOf | bqbiol:isHomologTo | bqbiol_isHomologTo | bqmodel:isDerivedFrom | bqmodel_isDerivedFrom | bqbiol:hasProperty | bqbiol_hasProperty | bqmodel:isDescribedBy | bqmodel_isDescribedBy | bqmodel:is | bqmodel_is |
| baseBqbiol | ||
| Work in progress... | ||
| Child elements | rdf:Bag | rdf_Bag |
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bqbiol_encodes
extends baseBqbiol |
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| See http://co.mbine.org/standards/qualifiers |
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bqbiol_hasPart
extends baseBqbiol |
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| See http://co.mbine.org/standards/qualifiers |
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bqbiol_hasProperty
extends baseBqbiol |
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| See http://co.mbine.org/standards/qualifiers |
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bqbiol_hasVersion
extends baseBqbiol |
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| See http://co.mbine.org/standards/qualifiers |
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bqbiol_is
extends baseBqbiol |
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| See http://co.mbine.org/standards/qualifiers |
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bqbiol_isDescribedBy
extends baseBqbiol |
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| See http://co.mbine.org/standards/qualifiers |
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bqbiol_isEncodedBy
extends baseBqbiol |
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| See http://co.mbine.org/standards/qualifiers |
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bqbiol_isHomologTo
extends baseBqbiol |
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| See http://co.mbine.org/standards/qualifiers |
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bqbiol_isPartOf
extends baseBqbiol |
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| See http://co.mbine.org/standards/qualifiers |
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bqbiol_isPropertyOf
extends baseBqbiol |
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| See http://co.mbine.org/standards/qualifiers |
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bqbiol_isVersionOf
extends baseBqbiol |
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| See http://co.mbine.org/standards/qualifiers | ||
| Text fields | xmlns:bqbiol | |
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bqbiol_occursIn
extends baseBqbiol |
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| See http://co.mbine.org/standards/qualifiers |
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bqbiol_hasTaxon
extends baseBqbiol |
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| See http://co.mbine.org/standards/qualifiers |
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bqmodel_is
extends baseBqbiol |
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| See http://co.mbine.org/standards/qualifiers |
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bqmodel_isDescribedBy
extends baseBqbiol |
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| See http://co.mbine.org/standards/qualifiers | ||
| Text fields | xmlns:bqmodel | |
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bqmodel_isDerivedFrom
extends baseBqbiol |
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| See http://co.mbine.org/standards/qualifiers |
| rdf_Bag | ||
| Work in progress... | ||
| Children elements | rdf:li | ??? |
| rdf_li | ||
| Annotation... | ||
| Text fields | rdf:resource | |
| point3DWithDiam | ||
| Base type for ComponentTypes which specify an ( x, y, z ) coordinate along with a diameter. Note: no dimension used in the attributes for these coordinates! These are assumed to have dimension micrometer (10^-6 m). This is due to micrometers being the default option for the majority of neuronal morphology formats, and dimensions are omitted here to facilitate reading and writing of morphologies in NeuroML. | ||
| Parameters | diameter | Dimensionless | x | Dimensionless | y | Dimensionless | z | Dimensionless |
| Derived Parameters | radius = MICRON * diameter / 2 | length | xLength = MICRON * x | length | yLength = MICRON * y | length | zLength = MICRON * z | length |
| Constants | MICRON = 1um | length |